PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0115s0089.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 230aa    MW: 25348.4 Da    PI: 6.5197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0115s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.8e-1795145255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+++AeIrd + ng   r+++g+f+ ae Aa a+++a+ +++g
  Kalax.0115s0089.1.p  95 SYRGVRRRP-WGKFAAEIRDSTRNG--IRVWIGTFDCAEAAALAYDQAAFAMKG 145
                          69*******.**********44465..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-1894154No hitNo description
SMARTSM003805.3E-3595159IPR001471AP2/ERF domain
PfamPF008479.7E-1395145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2995154IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2195154IPR016177DNA-binding domain
PROSITE profilePS5103222.16895153IPR001471AP2/ERF domain
PRINTSPR003677.6E-1396107IPR001471AP2/ERF domain
PRINTSPR003677.6E-13135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MASKFPPFNC SVSSWESDFS PQSSFGSWES DFSWESYSLM PDSMSMSIHS MPLHSTESIH  60
PLTAAAPAEQ AECETEEYKE VTSSAAERKA GKQKSYRGVR RRPWGKFAAE IRDSTRNGIR  120
VWIGTFDCAE AAALAYDQAA FAMKGSSATL NFPEEVVRES MSGVMDAGER GSPVLALKRR  180
HSMRRRSASG CSRVGKKLKE AGEEQRKQSV VVFEDLGAEY LEQLLSSCQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2792156266ATERF1
3gcc_A2e-2792156266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093429.11e-56Ethylene-responsive transcription factor 1B
SwissprotQ8LDC88e-54ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLD8VD376e-61D8VD37_ACTDE; Ethylene response factor 10
STRINGBra023745.1-P6e-53(Brassica rapa)
STRINGBra023746.1-P6e-53(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-44ethylene response factor 1